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About the Help category
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1
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64
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July 8, 2019
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Importing graphs from Seurat
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1
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8
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July 8, 2020
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How to do sc.pl.heatmap for rank genes, and only the top 25 genes from the ranked gene list
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2
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20
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July 3, 2020
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Best correlation between a given gene and the rest of genes
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1
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17
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June 30, 2020
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How to update UMAP within scanpy
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2
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24
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June 26, 2020
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Suppressing self-looping in PAGA
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1
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10
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June 24, 2020
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How to use batch normalized data for scanpy analysis
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1
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27
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June 12, 2020
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Pre-Integration Normalization
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1
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26
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June 9, 2020
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Integrating Data QCed in Seurat
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1
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25
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June 8, 2020
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Scale data in scanpy similar to ScaleData in Seurat?
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1
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27
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June 7, 2020
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Normalize a Concatenated Object on a Per Sample Basis
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1
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24
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June 5, 2020
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Read .RData in Scanpy
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7
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87
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May 28, 2020
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Creating a UMAP plot based on custom data
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5
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45
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May 24, 2020
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Sc.tl.rank_genes_groups to rank only 100 genes? What if I want to extract more genes from one cluster?
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3
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49
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May 22, 2020
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Raw Data from Seurat Loom File
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1
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38
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May 22, 2020
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When to perform batch correction?
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4
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122
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May 19, 2020
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Highly variable genes - best practice?
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3
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460
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May 18, 2020
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Suggestions for improving plots
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3
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42
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May 18, 2020
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Generating heatmap of all cells
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2
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47
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May 18, 2020
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Result of scanpy tools rank_genes_groups
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1
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52
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May 16, 2020
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Creating a plot of number cells vs UMI count
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4
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174
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May 16, 2020
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Error with mnnCorrect, maybe caused by numba?
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4
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390
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May 15, 2020
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Scaling after mnn_correct
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2
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35
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May 12, 2020
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Top expressed genes per cluster
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1
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31
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May 11, 2020
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Why max_out_group_fraction in sc.tl.filter_rank_genes_groups set to 0.5
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4
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54
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May 7, 2020
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Dotplot: how to make figure object
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1
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30
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May 6, 2020
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Import highly variable genes elsewhere
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5
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136
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May 5, 2020
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Why does UMAP plot look the same regardless of the number of PCs?
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3
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61
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May 3, 2020
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Renaming genes and subsetting by new names, python crashes
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2
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57
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May 4, 2020
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Merge multiple 10x samples
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2
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49
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May 1, 2020
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