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About the Help category
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1
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66
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July 8, 2019
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Error using PAGA
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2
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12
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July 24, 2020
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Getting Cells for list of genes ~ covid
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2
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33
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July 24, 2020
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Error running Harmony
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1
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21
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July 22, 2020
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Comparing control and treeated samples
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1
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18
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July 22, 2020
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Swapping X and Y axis for dotplot
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3
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17
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July 17, 2020
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How to rename genes in an anndata object?
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3
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30
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July 16, 2020
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Filtering cells by expression of specific gene
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1
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14
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July 16, 2020
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Highly variable genes - best practice?
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4
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530
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July 16, 2020
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How to get the cell's label of 10x data_file with scanpy?
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1
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12
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July 14, 2020
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Importing graphs from Seurat
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1
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38
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July 8, 2020
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How to do sc.pl.heatmap for rank genes, and only the top 25 genes from the ranked gene list
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2
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38
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July 3, 2020
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Best correlation between a given gene and the rest of genes
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1
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36
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June 30, 2020
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How to update UMAP within scanpy
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2
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36
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June 26, 2020
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Suppressing self-looping in PAGA
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1
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23
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June 24, 2020
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How to use batch normalized data for scanpy analysis
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1
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36
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June 12, 2020
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Pre-Integration Normalization
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1
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32
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June 9, 2020
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Integrating Data QCed in Seurat
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1
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34
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June 8, 2020
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Scale data in scanpy similar to ScaleData in Seurat?
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1
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34
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June 7, 2020
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Normalize a Concatenated Object on a Per Sample Basis
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1
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29
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June 5, 2020
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Read .RData in Scanpy
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7
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102
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May 28, 2020
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Creating a UMAP plot based on custom data
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5
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69
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May 24, 2020
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Sc.tl.rank_genes_groups to rank only 100 genes? What if I want to extract more genes from one cluster?
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3
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70
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May 22, 2020
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Raw Data from Seurat Loom File
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1
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61
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May 22, 2020
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When to perform batch correction?
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4
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151
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May 19, 2020
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Suggestions for improving plots
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3
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54
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May 18, 2020
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Generating heatmap of all cells
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2
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72
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May 18, 2020
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Result of scanpy tools rank_genes_groups
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1
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76
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May 16, 2020
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Creating a plot of number cells vs UMI count
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4
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191
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May 16, 2020
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Error with mnnCorrect, maybe caused by numba?
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4
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434
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May 15, 2020
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