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About the Help category
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0
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310
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July 8, 2019
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18.5 million obs, memory error, sc.pp.neighbors()
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1
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80
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May 3, 2022
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Subsetting cells based on gene expression
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2
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445
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April 29, 2022
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Saving figures creates blank pdfs
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5
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1173
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April 26, 2022
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Is it possible to add a title to plots from sc.pl.umap?
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5
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1042
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March 23, 2022
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Highly variable genes - best practice?
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6
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2585
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March 6, 2022
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Tutorial Error: .gz file
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1
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91
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March 3, 2022
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Best practices for integration and subsetting
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0
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76
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March 2, 2022
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How to group cells?
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0
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56
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March 2, 2022
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Obtaining PAGA results in tabular form
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1
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46
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February 23, 2022
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Where does AnnData store counts?
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2
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70
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February 16, 2022
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How to calculate the gene expression of a specific gene in each cell of the adata?
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0
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56
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February 15, 2022
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Plotting heatmap of top 20 DEGS (arranged based on Foldchanges and FDR)
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0
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65
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February 14, 2022
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Error in sc.pp.highly_variable_genes
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0
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208
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February 13, 2022
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Cell Population Subcluster Question
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2
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127
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February 10, 2022
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Store GeoPandas GeoDataFrame in Anndata
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0
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42
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February 4, 2022
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How to calculate the average gene expression within each cluster?
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9
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4316
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February 4, 2022
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Using Dot plot with obs data (e.g. PC1, PC2...)
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0
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59
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February 2, 2022
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Can you save pictures as a .h5ad format
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2
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132
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January 29, 2022
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How to sort the cluster in alphabetical order in UMAP?
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1
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113
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January 27, 2022
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How to overlay obs identities from one object to another?
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2
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154
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May 24, 2021
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Can you split umaps to show differences between conditions?
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2
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142
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January 25, 2022
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PAGA with minimum spanning tree
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0
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62
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January 25, 2022
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How to append annotations from sub-clustering objects?
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1
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97
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January 20, 2022
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Genes changing across pseudotime
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1
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121
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January 18, 2022
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Removal of clusters with few number of cells
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2
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202
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January 13, 2022
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Extract gene contribution to UMAP axis
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0
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88
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December 17, 2021
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Integration using MNN tutorial
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0
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74
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December 14, 2021
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Pre-Integration Normalization
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2
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414
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December 14, 2021
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Calculate_qc_metrics gene count
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1
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116
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December 6, 2021
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