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Analyzing CITE-seq data
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4
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368
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May 17, 2021
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Issues with very large data set
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4
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565
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May 13, 2021
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I'm running into an issue with the numba compiler and sc.pp.neighbors- LoweringError: Failed in nopython mode pipeline (step: nopython mode backend)
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1
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349
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April 5, 2021
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Saving Specific Cells based on Barcodes in 1 .csv file for downstream analyses in Partek Flow
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1
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739
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March 25, 2021
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Mnn_correct needs entire var_subset expressed in all groups?
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1
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275
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March 23, 2021
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What is the best way to use scanpy in slurm cluster
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1
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192
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March 21, 2021
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Demultiplexing quality measures for TotalSeq
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0
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172
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March 15, 2021
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How do you use the augmented matrix from harmony_timeseries in diffmap?
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0
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163
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March 12, 2021
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Correct format for genes/features.tsv read_10x_mtx
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1
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546
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February 22, 2021
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Taking too long to read loom files into scanpy
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2
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886
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October 23, 2020
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Question: average exression of normalized linear counts?
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2
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317
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October 22, 2020
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Find differentially expressed between multiple subsets of cells based on certain barcodes
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1
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237
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October 14, 2020
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Group 2 plots together
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0
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171
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September 10, 2020
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Subset adata by detectable expression of a specific gene
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1
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309
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September 10, 2020
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Logfoldchange definition
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0
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284
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September 10, 2020
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PyNNDescent release candidate
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0
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196
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September 6, 2020
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Clustering in scanpy plots
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0
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173
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September 5, 2020
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Pts in ranked_genes_groups
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0
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307
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September 4, 2020
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Scanpy.get.var_df
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1
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372
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May 22, 2020
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Change font family
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2
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586
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May 18, 2020
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DE using t-test overest var producing many non DE genes
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1
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451
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May 18, 2020
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Heatmap, max number of cells per cluster
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4
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942
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May 18, 2020
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Sc.get.obs_df function
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1
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517
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April 23, 2020
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Sc.pl.rank_genes_groups_heatmap colorbar order
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1
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539
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April 20, 2020
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How to consider fewer edges in PAGA plot?
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0
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262
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April 16, 2020
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How can I get a subset of adata by seting a threshold of gene expression
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0
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341
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March 12, 2020
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How to grouby ('leiden') and then sort by another obs
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0
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393
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March 3, 2020
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Trouble installing scanpy
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11
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1506
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August 8, 2019
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