Analyzing CITE-seq data
|
|
4
|
368
|
May 17, 2021
|
Issues with very large data set
|
|
4
|
565
|
May 13, 2021
|
I'm running into an issue with the numba compiler and sc.pp.neighbors- LoweringError: Failed in nopython mode pipeline (step: nopython mode backend)
|
|
1
|
349
|
April 5, 2021
|
Saving Specific Cells based on Barcodes in 1 .csv file for downstream analyses in Partek Flow
|
|
1
|
739
|
March 25, 2021
|
Mnn_correct needs entire var_subset expressed in all groups?
|
|
1
|
275
|
March 23, 2021
|
What is the best way to use scanpy in slurm cluster
|
|
1
|
192
|
March 21, 2021
|
Demultiplexing quality measures for TotalSeq
|
|
0
|
172
|
March 15, 2021
|
How do you use the augmented matrix from harmony_timeseries in diffmap?
|
|
0
|
163
|
March 12, 2021
|
Correct format for genes/features.tsv read_10x_mtx
|
|
1
|
546
|
February 22, 2021
|
Taking too long to read loom files into scanpy
|
|
2
|
886
|
October 23, 2020
|
Question: average exression of normalized linear counts?
|
|
2
|
317
|
October 22, 2020
|
Find differentially expressed between multiple subsets of cells based on certain barcodes
|
|
1
|
237
|
October 14, 2020
|
Group 2 plots together
|
|
0
|
171
|
September 10, 2020
|
Subset adata by detectable expression of a specific gene
|
|
1
|
309
|
September 10, 2020
|
Logfoldchange definition
|
|
0
|
284
|
September 10, 2020
|
PyNNDescent release candidate
|
|
0
|
196
|
September 6, 2020
|
Clustering in scanpy plots
|
|
0
|
173
|
September 5, 2020
|
Pts in ranked_genes_groups
|
|
0
|
307
|
September 4, 2020
|
Scanpy.get.var_df
|
|
1
|
372
|
May 22, 2020
|
Change font family
|
|
2
|
586
|
May 18, 2020
|
DE using t-test overest var producing many non DE genes
|
|
1
|
451
|
May 18, 2020
|
Heatmap, max number of cells per cluster
|
|
4
|
942
|
May 18, 2020
|
Sc.get.obs_df function
|
|
1
|
517
|
April 23, 2020
|
Sc.pl.rank_genes_groups_heatmap colorbar order
|
|
1
|
539
|
April 20, 2020
|
How to consider fewer edges in PAGA plot?
|
|
0
|
262
|
April 16, 2020
|
How can I get a subset of adata by seting a threshold of gene expression
|
|
0
|
341
|
March 12, 2020
|
How to grouby ('leiden') and then sort by another obs
|
|
0
|
393
|
March 3, 2020
|
Trouble installing scanpy
|
|
11
|
1506
|
August 8, 2019
|