CITE-seq analyisis

Hi I love using Scanpy + Scirpy for 10x single cell immunprofiling. But Now I have CITE-seq data. Do you have experience in using Scanpy for CITE-seq data? Can you share with us your experience here? Many thx! Tao

Maybe you can use muon or scvi-tools.
The former is a single-cell multimodal analysis tool based on scanpy, and the latter provides api for interacting with scanpy and anndata.