Thank you for taking your time reading this!
I wrote a for loop to make individual plots from sc.pl.umap(), and it’s running fine in jupyter notebook.
However, when I try to make it into a command line .py script, the python program stops at each plot generated. Does anyone has an idea on how to circumvent this problem and bypassing the showing of the plots?
for i in genelist: sc.pl.umap(adata, color=i, vmin=0,save='name.jpg')