Define "X_umap_hm" instead of "X_umap" in pl.umap

Hi all,
maybe a no brainer - how do I define in sc.pl.umap what umap should be taken?

umap representation is here:
obsm: ‘X_umap_hm’

I think normally it is probably ‘X_umap’ only

Thanks,
Simon

Hi Simon,

I think what you are after is sc.pl.embedding(adata, basis='X_umap_hm'). Can find more info here.

Best,
Chuck