I am trying to read the tsv file into scanpy. For some reason I could not upload it there. The tsv file is about 2GB and once I try to load it into scanpy using
sc.read_csv() or sc.read()
sc.read(’./data/Smajic_2020/IPDCO_hg_midbrain_UMI.tsv’, delimiter=’\t’, cache=True)
The Jupyter notebook got frozen and I could not move anywhere. I am currently running the script in Amazon Sagemaker, but loading large tsv does dot seem to work even on my local computer. Is there a particular way how to solve this problem?