Scanpy dotplot expression_cutoff :

Hello, I know that we can set a minimum expression cutoff for dotplots. Is it possible to set a maximum cutoff as well? Sometimes there are marker genes which are so highly expressed that they make the entire dotplot dimmer in comparison.

Thanks!

Try this one.

https://scanpy.readthedocs.io/en/stable/generated/classes/scanpy.pl.DotPlot.html#scanpy.pl.DotPlot

https://scanpy.readthedocs.io/en/stable/generated/classes/scanpy.pl.DotPlot.style.html#scanpy.pl.DotPlot.style

Hello @HaikuoLi

I went through all of those options already and the only relevant one i find is “expression_cutoff” which is for minimum and not maximum

I want to reduce the intensity of the highly expressed genes.